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realtime/simple Loading commit data...
CLAUDE.md Loading commit data...
README.txt Loading commit data...
all_output_types.xml Loading commit data...
bibtex.xml Loading commit data...
boolean_conditional.xml Loading commit data...
catDocker.xml Loading commit data...
cat_data_and_sleep.xml Loading commit data...
cat_multiple_user_defined.yml Loading commit data...
cat_user_defined.yml Loading commit data...
checksum.xml Loading commit data...
cheetah_casting.xml Loading commit data...
cheetah_problem_syntax_error.xml Loading commit data...
cheetah_problem_unbound_var.xml Loading commit data...
cheetah_problem_unbound_var_input.xml Loading commit data...
code_file.py Loading commit data...
code_file.xml Loading commit data...
collection_cat_group_tag.xml Loading commit data...
collection_cat_group_tag_multiple.xml Loading commit data...
collection_creates_dynamic_list_of_pairs.xml Loading commit data...
collection_creates_dynamic_nested.xml Loading commit data...
collection_creates_dynamic_nested_fail.xml Loading commit data...
collection_creates_dynamic_nested_from_json.xml Loading commit data...
collection_creates_dynamic_nested_from_json_elements.xml Loading commit data...
collection_creates_list.xml Loading commit data...
collection_creates_list_2.xml Loading commit data...
collection_creates_list_fail.xml Loading commit data...
collection_creates_list_of_pairs.xml Loading commit data...
collection_creates_pair.xml Loading commit data...
collection_creates_pair_format.xml Loading commit data...
collection_creates_pair_from_type.xml Loading commit data...
collection_creates_pair_from_work_dir.xml Loading commit data...
collection_creates_pair_y.yml Loading commit data...
collection_list_2x_or_3x_nested.xml Loading commit data...
collection_list_or_nested_list_input.xml Loading commit data...
collection_list_paired_or_unpaired.xml Loading commit data...
collection_mixed_param.xml Loading commit data...
collection_nested_default.xml Loading commit data...
collection_nested_test.xml Loading commit data...
collection_optional_param.xml Loading commit data...
collection_paired_conditional_structured_like.xml Loading commit data...
collection_paired_default.xml Loading commit data...
collection_paired_or_list_paired_input.xml Loading commit data...
collection_paired_or_unpaired.xml Loading commit data...
collection_paired_structured_like.xml Loading commit data...
collection_paired_test.xml Loading commit data...
collection_paired_test_y.yml Loading commit data...
collection_record_test_two_files.xml Loading commit data...
collection_split_on_column.xml Loading commit data...
collection_two_paired.xml Loading commit data...
collection_type_source.xml Loading commit data...
collection_type_source_map_over.xml Loading commit data...
color_param.xml Loading commit data...
column_multi_param.xml Loading commit data...
column_param.xml Loading commit data...
column_param_configfile.xml Loading commit data...
column_param_list.xml Loading commit data...
composite.xml Loading commit data...
composite_output.xml Loading commit data...
composite_output_tests.xml Loading commit data...
composite_shapefile.xml Loading commit data...
compressed_bz2_fastq_conversion.xml Loading commit data...
compressed_bz2_fastq_no_conversion.xml Loading commit data...
compressed_gz_fastq_conversion.xml Loading commit data...
compressed_gz_fastq_no_conversion.xml Loading commit data...
compressed_neostorezip_neostore_conversion.xml Loading commit data...
compressed_neostorezip_neostore_no_conversion.xml Loading commit data...
config_vars.xml Loading commit data...
configfile_user_defined.yml Loading commit data...
converter_target_datatype.xml Loading commit data...
create_10.xml Loading commit data...
create_2.xml Loading commit data...
create_directory_index.xml Loading commit data...
data_manager.xml Loading commit data...
data_manager_add.xml Loading commit data...
data_manager_add_remove.xml Loading commit data...
data_optional.xml Loading commit data...
data_source.py Loading commit data...
dbkey_filter_collection.xml Loading commit data...
dbkey_filter_input.xml Loading commit data...
dbkey_filter_multi_input.xml Loading commit data...
dbkey_output_action.xml Loading commit data...
detect_errors.xml Loading commit data...
detect_errors_aggressive.xml Loading commit data...
directory_uri.xml Loading commit data...
directory_uri_copy_to.py Loading commit data...
disambiguate_cond.xml Loading commit data...
disambiguate_repeats.xml Loading commit data...
discover_default_ext.xml Loading commit data...
discover_metadata_files.xml Loading commit data...
discover_sort_by.xml Loading commit data...
discover_sort_by_legacy_test.xml Loading commit data...
drill_down.xml Loading commit data...
empty_datasets.xml Loading commit data...
empty_output.xml Loading commit data...
empty_select.xml Loading commit data...
environment_variables.xml Loading commit data...
environment_variables_inject.xml Loading commit data...
exit_code_from_env.xml Loading commit data...
exit_code_from_file.xml Loading commit data...
exit_code_oom.xml Loading commit data...
expect_num_outputs.xml Loading commit data...
explicit_container.xml Loading commit data...
explicit_conversion.xml Loading commit data...
explicit_singularity_container.xml Loading commit data...
export_remote.py Loading commit data...
export_remote.xml Loading commit data...
expression_forty_two.xml Loading commit data...
expression_log_line_count.xml Loading commit data...
expression_null_handling_boolean.xml Loading commit data...
expression_null_handling_float.xml Loading commit data...
expression_null_handling_integer.xml Loading commit data...
expression_null_handling_text.xml Loading commit data...
expression_parse_int.xml Loading commit data...
expression_pick_larger_file.xml Loading commit data...
expression_text_to_bool.xml Loading commit data...
expression_tools Loading commit data...
fail_identifier.xml Loading commit data...
fail_writing_work_dir_file.xml Loading commit data...
filter_attribute_value_splitter.xml Loading commit data...
filter_data_table.xml Loading commit data...
filter_multiple_splitter.xml Loading commit data...
filter_param_value.xml Loading commit data...
filter_param_value_ref_attribute.xml Loading commit data...
filter_static_regexp.xml Loading commit data...
float_default.xml Loading commit data...
format_source_in_conditional.xml Loading commit data...
from_work_dir_glob.xml Loading commit data...
galaxy_json_discover_and_sleep.xml Loading commit data...
galaxy_slots_and_memory.xml Loading commit data...
gzipped_inputs.xml Loading commit data...
help_features_markdown.xml Loading commit data...
help_features_rst.xml Loading commit data...
hidden_param.xml Loading commit data...
html_output.xml Loading commit data...
html_output_with_extra_files.xml Loading commit data...
identifier_all_collection_types.xml Loading commit data...
identifier_collection.xml Loading commit data...
identifier_in_actions.xml Loading commit data...
identifier_in_conditional.xml Loading commit data...
identifier_multiple.xml Loading commit data...
identifier_multiple_in_conditional.xml Loading commit data...
identifier_multiple_in_repeat.xml Loading commit data...
identifier_single.xml Loading commit data...
identifier_single_in_repeat.xml Loading commit data...
identifier_source.xml Loading commit data...
image_diff.xml Loading commit data...
implicit_collection_conversion.xml Loading commit data...
implicit_conversion.xml Loading commit data...
implicit_conversion_format_input.xml Loading commit data...
implicit_conversion_optional_param.xml Loading commit data...
implicit_default_conds.xml Loading commit data...
implicit_nested_list_conversion.xml Loading commit data...
inheritance_simple.xml Loading commit data...
inputs_as_json.xml Loading commit data...
inputs_as_json_profile.xml Loading commit data...
inputs_as_json_with_paths.xml Loading commit data...
inputs_as_json_with_staging_path_and_source_path.xml Loading commit data...
integer_default.xml Loading commit data...
interactivetool_simple.xml Loading commit data...
interactivetool_two_entry_points.xml Loading commit data...
is_of_type.xml Loading commit data...
is_valid_xml.xml Loading commit data...
job_environment_default.xml Loading commit data...
job_environment_default_legacy.xml Loading commit data...
job_environment_explicit_isolated_home.xml Loading commit data...
job_environment_explicit_shared_home.xml Loading commit data...
job_properties.xml Loading commit data...
legacy_interpreter.xml Loading commit data...
legacy_interpreter_write_output.py Loading commit data...
legacy_r.xml Loading commit data...
markdown_report_extra_files.xml Loading commit data...
markdown_report_from_script.xml Loading commit data...
markdown_report_simple.xml Loading commit data...
markdown_report_simple_script.py Loading commit data...
maxseconds.xml Loading commit data...
md5sum.xml Loading commit data...
metadata.xml Loading commit data...
metadata_bam.xml Loading commit data...
metadata_bcf.xml Loading commit data...
metadata_bed.xml Loading commit data...
metadata_biom1.xml Loading commit data...
metadata_check_eq.xml Loading commit data...
metadata_column_names.xml Loading commit data...
min_repeat.xml Loading commit data...
model_attributes.xml Loading commit data...
mulled_example_broken_no_requirements.xml Loading commit data...
mulled_example_broken_no_requirements_fallback.xml Loading commit data...
mulled_example_conflict.xml Loading commit data...
mulled_example_explicit.xml Loading commit data...
mulled_example_invalid_case.xml Loading commit data...
mulled_example_multi_1.xml Loading commit data...
mulled_example_multi_incomplete.xml Loading commit data...
mulled_example_multi_versionless.xml Loading commit data...
mulled_example_simple.xml Loading commit data...
multi_data_optional.xml Loading commit data...
multi_data_param.xml Loading commit data...
multi_data_repeat.xml Loading commit data...
multi_output.xml Loading commit data...
multi_output_assign_primary.xml Loading commit data...
multi_output_assign_primary2.xml Loading commit data...
multi_output_assign_primary_ext_dbkey.xml Loading commit data...
multi_output_configured.xml Loading commit data...
multi_output_recurse.xml Loading commit data...
multi_output_recurse_collection.xml Loading commit data...
multi_repeats.xml Loading commit data...
multi_select.xml Loading commit data...
multiple_versions_changes_v01.xml Loading commit data...
multiple_versions_changes_v02.xml Loading commit data...
multiple_versions_sorting_v110.xml Loading commit data...
multiple_versions_sorting_v19.xml Loading commit data...
multiple_versions_v01.xml Loading commit data...
multiple_versions_v01galaxy6.xml Loading commit data...
multiple_versions_v02.xml Loading commit data...
options_from_metadata_file.xml Loading commit data...
output_action_change_format.xml Loading commit data...
output_action_change_format_paired.xml Loading commit data...
output_auto_format.xml Loading commit data...
output_collection_filter.xml Loading commit data...
output_empty_work_dir.xml Loading commit data...
output_filter.xml Loading commit data...
output_filter_exception_1.xml Loading commit data...
output_filter_with_input.xml Loading commit data...
output_filter_with_input_optional.xml Loading commit data...
output_format.xml Loading commit data...
output_format_collection.xml Loading commit data...
output_format_deprecated_when.xml Loading commit data...
output_format_input.xml Loading commit data...
output_order.xml Loading commit data...
parallelism.xml Loading commit data...
parallelism_optional.xml Loading commit data...
param_text_option.xml Loading commit data...
paths_as_file.xml Loading commit data...
python_environment_problem.py Loading commit data...
python_environment_problem.xml Loading commit data...
qc_stdout.xml Loading commit data...
remote_test_data_location.xml Loading commit data...
remove_value.xml Loading commit data...
resource_requirements.xml Loading commit data...
sam_to_bam.xml Loading commit data...
sam_to_unsorted_bam.xml Loading commit data...
sample_data_manager_conf.xml Loading commit data...
sample_datatypes_conf.xml Loading commit data...
sample_tool_conf.xml Loading commit data...
secret_tool.xml Loading commit data...
section.xml Loading commit data...
section_24_2.xml Loading commit data...
select_dynamic.xml Loading commit data...
select_from_csvdataset.xml Loading commit data...
select_from_dataset.xml Loading commit data...
select_from_dataset_in_conditional.xml Loading commit data...
select_from_dataset_optional.xml Loading commit data...
select_from_url.xml Loading commit data...
select_optional.xml Loading commit data...
select_optional_legacy.xml Loading commit data...
sim_size_delta.xml Loading commit data...
simple_constructs.xml Loading commit data...
simple_constructs.yml Loading commit data...
special_params.xml Loading commit data...
strict_shell.xml Loading commit data...
strict_shell_default_off.xml Loading commit data...
strict_shell_profile.xml Loading commit data...
test_data_source.xml Loading commit data...
text_repeat.xml Loading commit data...
tool_directory.xml Loading commit data...
tool_directory_copy.xml Loading commit data...
tool_directory_docker.xml Loading commit data...
tool_provided_metadata_1.xml Loading commit data...
tool_provided_metadata_10.xml Loading commit data...
tool_provided_metadata_11.xml Loading commit data...
tool_provided_metadata_12.xml Loading commit data...
tool_provided_metadata_2.xml Loading commit data...
tool_provided_metadata_3.xml Loading commit data...
tool_provided_metadata_4.xml Loading commit data...
tool_provided_metadata_5.xml Loading commit data...
tool_provided_metadata_6.xml Loading commit data...
tool_provided_metadata_7.xml Loading commit data...
tool_provided_metadata_8.xml Loading commit data...
tool_provided_metadata_9.xml Loading commit data...
top_level_data.xml Loading commit data...
ucsc_tablebrowser.xml Loading commit data...
unicode_stream.xml Loading commit data...
upload.py Loading commit data...
upload.xml Loading commit data...
upload_tool_conf.xml Loading commit data...
use_directory_index.xml Loading commit data...
validation_dataset_metadata_in_file.xml Loading commit data...
validation_default.xml Loading commit data...
validation_empty_dataset.xml Loading commit data...
validation_hdf5.xml Loading commit data...
validation_image.xml Loading commit data...
validation_metadata_in_datatable.xml Loading commit data...
validation_metadata_in_range.xml Loading commit data...
validation_repeat.xml Loading commit data...
validation_sanitizer.xml Loading commit data...
validation_tar.xml Loading commit data...
validation_tar_gz.xml Loading commit data...
validation_value_in_datatable.xml Loading commit data...
validation_zip.xml Loading commit data...
vcf_bgzip.xml Loading commit data...
version_command.py Loading commit data...
version_command_interpreter.xml Loading commit data...
version_command_plain.xml Loading commit data...
version_command_tool_dir.xml Loading commit data...