"""Test installation using galaxy.tool_shed package.

It should be able to quickly test installing things from the real tool shed
and from bootstrapped tool sheds.
"""

from pathlib import Path
from typing import (
    Any,
    cast,
    TYPE_CHECKING,
)

from galaxy.model.tool_shed_install import ToolShedRepository
from galaxy.tool_shed.galaxy_install.install_manager import InstallRepositoryManager
from galaxy.tool_shed.unittest_utils import StandaloneInstallationTarget
from galaxy.tool_shed.util.repository_util import check_for_updates
from galaxy.util.tool_shed.tool_shed_registry import DEFAULT_TOOL_SHED_URL
from galaxy.util.unittest_utils import skip_if_site_down

if TYPE_CHECKING:
    from galaxy.model.scoped_session import install_model_scoped_session


@skip_if_site_down(DEFAULT_TOOL_SHED_URL)
def test_against_production_shed(tmp_path: Path):
    repo_owner = "iuc"
    repo_name = "featurecounts"
    repo_revision = "f9d49f5cb597"

    install_target = StandaloneInstallationTarget(tmp_path)
    install_manager = InstallRepositoryManager(install_target)
    install_options: dict[str, Any] = {}
    install_manager.install(
        DEFAULT_TOOL_SHED_URL,
        repo_name,
        repo_owner,
        repo_revision,  # revision 2, a known installable revision
        install_options,
    )
    tool_guid = f"toolshed.g2.bx.psu.edu/repos/{repo_owner}/{repo_name}/featurecounts/2.0.3+galaxy2"
    with open(tmp_path / "shed_conf.xml") as f:
        assert tool_guid in f.read()
    repo_path = tmp_path / "tools" / "toolshed.g2.bx.psu.edu" / "repos" / repo_owner / repo_name / repo_revision
    assert repo_path.exists()
    tool_data_table_path = (
        tmp_path
        / "tool_data"
        / "toolshed.g2.bx.psu.edu"
        / "repos"
        / repo_owner
        / repo_name
        / repo_revision
        / "tool_data_table_conf.xml"
    )
    assert tool_data_table_path.exists()

    install_model_context = cast("install_model_scoped_session", install_target.install_model.session)
    query = install_model_context.query(ToolShedRepository).where(ToolShedRepository.name == repo_name)
    tsr = query.first()
    assert tsr
    message, status = check_for_updates(
        install_target.tool_shed_registry,
        install_model_context,
        tsr.id,
    )
    assert status

    irm = install_target.installed_repository_manager
    errors = irm.uninstall_repository(repository=tsr, remove_from_disk=True)
    assert not errors

    with open(tmp_path / "shed_conf.xml") as f:
        assert tool_guid not in f.read()

    assert not repo_path.exists()
    # Tool data tables are not removed when uninstalling a repository