import os from galaxy_test.base.populators import ( DatasetPopulator, WorkflowPopulator, ) from galaxy_test.driver import integration_util SCRIPT_DIRECTORY = os.path.abspath(os.path.dirname(__file__)) JOB_RESOURCES_CONFIG_FILE = os.path.join(SCRIPT_DIRECTORY, "dummy_job_resource_parameters.xml") JOB_CONFIG = os.path.join(SCRIPT_DIRECTORY, "job_resource_error_recovery_job_conf.yml") class TestJobRecoveryBeforeHandledIntegration(integration_util.IntegrationTestCase): dataset_populator: DatasetPopulator framework_tool_and_types = True def setUp(self) -> None: super().setUp() self.dataset_populator = DatasetPopulator(self.galaxy_interactor) self.workflow_populator = WorkflowPopulator(self.galaxy_interactor) @classmethod def handle_galaxy_config_kwds(cls, config) -> None: super().handle_galaxy_config_kwds(config) config["job_config_file"] = JOB_CONFIG config["job_resource_params_file"] = JOB_RESOURCES_CONFIG_FILE def test_recovers_from_job_resource_errors(self): with self.dataset_populator.test_history() as history_id: self.workflow_populator.run_workflow( """ class: GalaxyWorkflow steps: simple_step: tool_id: create_2 tool_state: __job_resource: __job_resource__select: 'yes' cores: '32' """, history_id=history_id, )