class: GalaxyTool
id: collection_paired_test_y
name: collection_paired_test_y
version: "0.1.0"
container: busybox
shell_command: |
  cat '$(inputs.f1.elements.forward.path)' '$(inputs.f1.elements.reverse.path)' >> out1.txt
  echo 'Collection name: $(inputs.f1.name)'
inputs:
  - name: f1
    type: data_collection
    collection_type: paired
    label: Input pair
outputs:
  - name: out1
    type: data
    format: txt
    from_work_dir: out1.txt
tests:
  - inputs:
      f1:
        class: Collection
        collection_type: paired
        name: collection name
        elements:
          - identifier: forward
            class: File
            path: simple_line.txt
          - identifier: reverse
            class: File
            path: simple_line_alternative.txt
    outputs:
      out1:
        asserts:
          - has_line:
              line: This is a line of text.
          - has_line:
              line: This is a different line of text.
    assert_stdout:
      - has_line:
          line: "Collection name: collection name"