import argparse import json import requests import yaml def main(): parser = argparse.ArgumentParser(description="Upload a directory into a data library") parser.add_argument("-u", "--url", dest="url", required=True, help="Galaxy URL") parser.add_argument("-a", "--api", dest="api_key", required=True, help="API Key") parser.add_argument("target", metavar="FILE", type=str, help="file describing data library to fetch") args = parser.parse_args() with open(args.target) as f: target = yaml.safe_load(f) histories_url = args.url + "/api/histories" new_history_response = requests.post(histories_url, data={"key": args.api_key}) fetch_url = args.url + "/api/tools/fetch" payload = {"key": args.api_key, "targets": json.dumps([target]), "history_id": new_history_response.json()["id"]} response = requests.post(fetch_url, data=payload) print(response.content) if __name__ == "__main__": main()