History ------- .. to_doc --------- 26.1.dev0 --------- ------------------- 25.1.2 (2026-03-09) ------------------- ========= Bug fixes ========= * Add missing enable_beta_tool_formats config option by `@bernt-matthias `_ in `#21190 `_ ============ Enhancements ============ * Add Deacon idx format by `@SantaMcCloud `_ in `#21632 `_ * Add amnis cif flow cytometry data type by `@bernt-matthias `_ in `#21829 `_ ------------------- 25.1.1 (2026-02-03) ------------------- ========= Bug fixes ========= * Use quotes for Galaxy citation bibtex by `@bernt-matthias `_ in `#21563 `_ * Add split paired or unpaired tool to sample tool conf by `@bernt-matthias `_ in `#21647 `_ * Add missing filter_failed_collection_1.1.0.xml tool by `@mvdbeek `_ in `#21719 `_ ============ Enhancements ============ * add new datatype for kmindex index data by `@Smeds `_ in `#21429 `_ * Add Sourmash sig new datatype by `@SaimMomin12 `_ in `#21469 `_ * Adds object_expires_after_days example usage to sample config by `@davelopez `_ in `#21547 `_ * Add a few datatypes from the digital humanities domain by `@bgruening `_ in `#21596 `_ * Add new datatype pg and hg for pangenomics by `@SaimMomin12 `_ in `#21620 `_ * Add database operation tool to convert sample sheets to list collections by `@mvdbeek `_ in `#21625 `_ * Add new datatypes required for VG tool by `@SaimMomin12 `_ in `#21644 `_ ------------------- 25.1.0 (2025-12-12) ------------------- ========= Bug fixes ========= * Fix typo in lib/galaxy/config/sample/job_conf.sample.yml: enviroment --> environment by `@blankenberg `_ in `#20652 `_ ============ Enhancements ============ * Implement Sample Sheets by `@jmchilton `_ in `#19305 `_ * Add rerun.io web viewer by `@guerler `_ in `#20202 `_ * Split Login and Register, enable OIDC Registration. by `@uwwint `_ in `#20287 `_ * Add LocusZoom Visualization by `@elmedjadjirayane `_ in `#20354 `_ * Remove deprecated tool document cache by `@nsoranzo `_ in `#20510 `_ * Decode OIDC access token as part of authentication pipeline by `@marius-mather `_ in `#20547 `_ * Display the Galaxy Citation within the Export Tool References List by `@mschatz `_ in `#20584 `_ * Clean up code from pyupgrade by `@nsoranzo `_ in `#20642 `_ * Update location of latest tpv shared db by `@nuwang `_ in `#20651 `_ * Allow adding extra steps to the default pipeline of the OIDC authentication by `@marius-mather `_ in `#20845 `_ * Various Container Execution Enhancements (including GCP Batch support) by `@jmchilton `_ in `#20862 `_ * Replace tour_generator webhook with internal API and frontend by `@ahmedhamidawan `_ in `#20868 `_ * Add axt and maf to auto_compressed_types by `@richard-burhans `_ in `#20875 `_ * Add Multiple Sequence Alignment Viewer 2.0 by `@guerler `_ in `#20907 `_ * Add tool to add nesting level to collection by `@bernt-matthias `_ in `#20926 `_ * Make jupyterlite default visualization for ipynb by `@guerler `_ in `#20931 `_ * Allow addressing user defined tools in job config by `@mvdbeek `_ in `#20932 `_ * Allow specifying a command for determining a docker host port by `@natefoo `_ in `#20953 `_ * Add freq.json datatype subclass by `@guerler `_ in `#21012 `_ * New datatype addition: HAL by `@SaimMomin12 `_ in `#21379 `_ * Add PNTS datatype for 3D Tiles Point Cloud by `@kgerb `_ in `#21414 `_ ============= Other changes ============= * Merge `release_25.0` into `dev` by `@davelopez `_ in `#20484 `_ ------------------- 25.0.4 (2025-11-18) ------------------- ========= Bug fixes ========= * Add safetensors datatype by `@nilchia `_ in `#20754 `_ * Fix MIME type for LAZ datatype by `@kysrpex `_ in `#21202 `_ ============ Enhancements ============ * Add Auspice JSON datatype by `@pvanheus `_ in `#20466 `_ * Add SpatialData datatype by `@nilchia `_ in `#21000 `_ * Add LAS and LAZ file format by `@bgruening `_ in `#21049 `_ * New datatype addition: gam for vg toolkit by `@SaimMomin12 `_ in `#21096 `_ * support ZARR v3 for Spatialdata dt by `@nilchia `_ in `#21265 `_ ============= Other changes ============= * New datatype addition: beast.trees datatype by `@SaimMomin12 `_ in `#21055 `_ * Add display_in_upload to LAZ and LAS by `@bgruening `_ in `#21060 `_ ------------------- 25.0.3 (2025-09-23) ------------------- ============ Enhancements ============ * Fix DOCX detection and add PPTX support by `@arash77 `_ in `#20827 `_ * Add HiC datatype by `@abretaud `_ in `#20874 `_ ============= Other changes ============= * Undo accidental push by `@bernt-matthias `_ in `#20854 `_ * Merge 25.0 into dev by `@ahmedhamidawan `_ in `#20911 `_ ------------------- 25.0.2 (2025-08-13) ------------------- ============ Enhancements ============ * add fasta.bz2 as auto_compressed type by `@bernt-matthias `_ in `#20496 `_ * Add datatype for LexicMap index by `@Smeds `_ in `#20586 `_ * Add mzMLb and MBI datatypes by `@chambm `_ in `#20632 `_ * Pairtool updated format and sniffers by `@Smeds `_ in `#20634 `_ * Add support for M4A audio files by `@arash77 `_ in `#20667 `_ ------------------- 25.0.1 (2025-06-20) ------------------- ========= Bug fixes ========= * Fix `galaxy-config` script, move install to `galaxy-dependencies` in app package by `@natefoo `_ in `#20531 `_ ============= Other changes ============= * Fixes for static handling and the web_client package by `@natefoo `_ in `#20516 `_ ------------------- 25.0.0 (2025-06-18) ------------------- ========= Bug fixes ========= * Use ``resource_path()`` to access datatypes_conf.xml.sample as a package resource by `@nsoranzo `_ in `#19331 `_ * Remove hgv_sift from tool_conf.xml.sample by `@natefoo `_ in `#19972 `_ * Add job config variable for singularity `--contain` by `@bernt-matthias `_ in `#20400 `_ ============ Enhancements ============ * Isolate singularity containers more thoroughly for better reproducibility. by `@rhpvorderman `_ in `#18628 `_ * Implement tool markdown reports. by `@jmchilton `_ in `#19054 `_ * Calculate hash for new non-deferred datasets when finishing a job by `@nsoranzo `_ in `#19181 `_ * eLabFTW integration via Galaxy file source by `@kysrpex `_ in `#19319 `_ * Misc fixes 202412 by `@nsoranzo `_ in `#19341 `_ * Add Dataverse RDM repository integration by `@KaiOnGitHub `_ in `#19367 `_ * Clarify that extra_scopes is sometimes non-optional by `@martenson `_ in `#19385 `_ * Change galaxy system user uid for K8s image by `@afgane `_ in `#19403 `_ * Prevent users from reusing a banned email after account is purged by `@jdavcs `_ in `#19413 `_ * Add IGB display support for CRAM files by `@paige-kulzer `_ in `#19428 `_ * Add config options for tool dependency installs by `@afgane `_ in `#19565 `_ * Support setting masthead height in a theme by `@ksuderman `_ in `#19581 `_ * Add failed jobs working directory cleanup as a celery periodic task by `@sanjaysrikakulam `_ in `#19594 `_ * Enhance OpenAI Chat Integration by `@uwwint `_ in `#19612 `_ * Data-source tool for DICED database (https://diced.lerner.ccf.org/) added. by `@jaidevjoshi83 `_ in `#19689 `_ * Update RStudio IT by `@afgane `_ in `#19711 `_ * Add bigbed to bed converter and tests by `@d-callan `_ in `#19787 `_ * Decrease sentry_sdk.errors log level to INFO by `@natefoo `_ in `#19951 `_ * Allow different AI providers (as long as they are openai compatible) by `@uwwint `_ in `#19989 `_ * Add vitesscejson datatype by `@guerler `_ in `#20027 `_ * Add VTK Visualization Toolkit Plugin by `@guerler `_ in `#20028 `_ * Add docx datatype by `@bgruening `_ in `#20055 `_ * Add markdown datatype by `@bgruening `_ in `#20056 `_ * Add flac audio format by `@bgruening `_ in `#20057 `_ * Add rd datatype by `@richard-burhans `_ in `#20060 `_ * Enhance external login interface styling by `@ahmedhamidawan `_ in `#20100 `_ * Add specific datatypes for Cytoscape and Kepler.gl by `@guerler `_ in `#20117 `_ * Add more metadata, esp `infer_from` to datatypes configuration by `@bgruening `_ in `#20142 `_ * Add three AAI providers by `@martenson `_ in `#20165 `_ * Add replacement_dataset option to collection filter tools by `@simonbray `_ in `#20166 `_ * Visualization-First Display functionality by `@dannon `_ in `#20190 `_ * Deprecate ``enable_tool_document_cache`` by `@nsoranzo `_ in `#20433 `_ * Add Aladin as standard FITS viewer by `@bgruening `_ in `#20465 `_ * Add molstar as default viewer for some molecule formats by `@bgruening `_ in `#20467 `_ ============= Other changes ============= * Make job cache generally available by `@dannon `_ in `#19798 `_ * Rename vitessce_json file_ext to vitessce.json by `@mvdbeek `_ in `#20473 `_ ------------------- 24.2.4 (2025-06-17) ------------------- ========= Bug fixes ========= * Reduce default framework tool test timeout to 60 seconds by `@mvdbeek `_ in `#19819 `_ ------------------- 24.2.3 (2025-03-16) ------------------- ============ Enhancements ============ * Add rDock prm datatype by `@nsoranzo `_ in `#19783 `_ ------------------- 24.2.2 (2025-03-08) ------------------- ========= Bug fixes ========= * Fix conditional dependency path resolution by `@mvdbeek `_ in `#19723 `_ ============ Enhancements ============ * Add bwa_mem2_index directory datatype, framework enhancements for testing directories by `@mvdbeek `_ in `#19694 `_ ------------------- 24.2.1 (2025-02-28) ------------------- ========= Bug fixes ========= * Updated registration warning message by `@dannon `_ in `#19598 `_ ============ Enhancements ============ * Add fastk_ktab_tar datatype required for fastk tool by `@SaimMomin12 `_ in `#19615 `_ ------------------- 24.2.0 (2025-02-11) ------------------- ========= Bug fixes ========= * Fix loading error for built in tool `sift` by `@bernt-matthias `_ in `#18357 `_ * Add gtf to auto_compressed_types by `@mvdbeek `_ in `#19175 `_ * Partial backport of #19331 by `@nsoranzo `_ in `#19342 `_ * Fix to only show ChatGXY when available. by `@dannon `_ in `#19389 `_ ============ Enhancements ============ * Experimental galactic wizard by `@dannon `_ in `#15860 `_ * Improve usability of Directory datatype by `@wm75 `_ in `#17614 `_ * Add pod5 datatype by `@TomHarrop `_ in `#18419 `_ * Add onedata templates by `@bwalkowi `_ in `#18457 `_ * Support high-availability setups for the interactive tools proxy by `@kysrpex `_ in `#18481 `_ * Minor config documentation enhancements by `@bgruening `_ in `#18499 `_ * Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton `_ in `#18524 `_ * Bring your own file sources: Add the WebDAV template and configuration by `@sanjaysrikakulam `_ in `#18598 `_ * Add BlobToolkit to the list of interactive tools by `@Delphine-L `_ in `#18630 `_ * Remove `defaults` channel for conda usage by `@bernt-matthias `_ in `#18757 `_ * Workflow Landing Requests by `@jmchilton `_ in `#18807 `_ * Jupyter Interactive Tool 1.0.1/24.07 by `@natefoo `_ in `#18861 `_ * Allow setting a few global defaults for file source plugin types. by `@jmchilton `_ in `#18909 `_ * Add filter null collection operation tool by `@mvdbeek `_ in `#18928 `_ * Add hint to the tool schema about runtime conditional changes by `@martenson `_ in `#18996 `_ * Irods ssl connection by `@pauldg `_ in `#19014 `_ * Add some Zarr-based datatypes by `@davelopez `_ in `#19040 `_ * Run installed Galaxy with no config and a simplified entry point by `@natefoo `_ in `#19050 `_ * Add XML based `vtk` datatype by `@tStehling `_ in `#19104 `_ * Allow a posix file source to prefer linking. by `@jmchilton `_ in `#19132 `_ * Add bcsp datatype by `@SantaMcCloud `_ in `#19365 `_ * add MuData as subclass of H5 by `@pavanvidem `_ in `#19416 `_ ------------------- 24.1.4 (2024-12-11) ------------------- ========= Bug fixes ========= * Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ * Strip whitespace when listifying admin users by `@jdavcs `_ in `#18656 `_ * Remove defaults channel for conda usage by `@bernt-matthias `_ in `#18859 `_ ============ Enhancements ============ * Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ * More datatype deprecation warnings by `@mvdbeek `_ in `#18612 `_ * Implemented the generic OIDC backend from python-social-auth into Gal… by `@Edmontosaurus `_ in `#18670 `_ ============= Other changes ============= * Backport pod5 datatype by `@TomHarrop `_ in `#18507 `_ * Backport PR 18630 "Add BlobToolkit to the list of interactive tools" to release_24.1 by `@cat-bro `_ in `#18784 `_ ------------------- 24.1.3 (2024-10-25) ------------------- ========= Bug fixes ========= * Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ * Strip whitespace when listifying admin users by `@jdavcs `_ in `#18656 `_ * Remove defaults channel for conda usage by `@bernt-matthias `_ in `#18859 `_ ============ Enhancements ============ * Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ * More datatype deprecation warnings by `@mvdbeek `_ in `#18612 `_ * Implemented the generic OIDC backend from python-social-auth into Gal… by `@Edmontosaurus `_ in `#18670 `_ ============= Other changes ============= * Backport pod5 datatype by `@TomHarrop `_ in `#18507 `_ * Backport PR 18630 "Add BlobToolkit to the list of interactive tools" to release_24.1 by `@cat-bro `_ in `#18784 `_ ------------------- 24.1.2 (2024-09-25) ------------------- ========= Bug fixes ========= * Strip whitespace when listifying admin users by `@jdavcs `_ in `#18656 `_ ============ Enhancements ============ * Make `default_panel_view` a `_by_host` option by `@natefoo `_ in `#18471 `_ * More datatype deprecation warnings by `@mvdbeek `_ in `#18612 `_ * Implemented the generic OIDC backend from python-social-auth into Gal… by `@Edmontosaurus `_ in `#18670 `_ ============= Other changes ============= * Backport pod5 datatype by `@TomHarrop `_ in `#18507 `_ * Backport PR 18630 "Add BlobToolkit to the list of interactive tools" to release_24.1 by `@cat-bro `_ in `#18784 `_ ------------------- 24.1.1 (2024-07-02) ------------------- ========= Bug fixes ========= * Replace sample Celery result_backend in config by `@davelopez `_ in `#17949 `_ * Fix for unexpected OIDC XML validation error by `@Edmontosaurus `_ in `#18106 `_ * Fix various packages' issues by `@nsoranzo `_ in `#18301 `_ * Rebuild Galaxy config by `@bgruening `_ in `#18325 `_ ============ Enhancements ============ * Enable all-vs-all collection analysis patterns. by `@jmchilton `_ in `#17366 `_ * Add onedata objectstore by `@bwalkowi `_ in `#17540 `_ * Add colabfold tar file datatype by `@astrovsky01 `_ in `#17567 `_ * Update Python dependencies by `@galaxybot `_ in `#17653 `_ * SQLAlchemy 2.0 by `@jdavcs `_ in `#17778 `_ * Add `email` notifications channel by `@davelopez `_ in `#17914 `_ * Update config docs about Celery by `@davelopez `_ in `#17918 `_ * Make urgent notifications mandatory by `@davelopez `_ in `#17975 `_ * Enable ``warn_unused_ignores`` mypy option by `@nsoranzo `_ in `#17991 `_ * Add Zenodo integration by `@davelopez `_ in `#18022 `_ * Add support for additional media types by `@arash77 `_ in `#18054 `_ * Update Python dependencies by `@galaxybot `_ in `#18063 `_ * Add Net datatype by `@martenson `_ in `#18080 `_ * Empower users to bring their own storage and file sources by `@jmchilton `_ in `#18127 `_ * More unit testing for object store stuff. by `@jmchilton `_ in `#18136 `_ * Tighten axt sniffer by `@martenson `_ in `#18204 `_ * More structured indexing for user data objects. by `@jmchilton `_ in `#18291 `_ * Onedada object store and files source stability fixes by `@bwalkowi `_ in `#18372 `_ ============= Other changes ============= * Chore: remove repetitive words by `@tianzedavid `_ in `#18076 `_ * Fix the link to the carbon config by `@bgruening `_ in `#18314 `_ ------------------- 24.0.3 (2024-06-28) ------------------- ========= Bug fixes ========= * Backport OIDC schema fix by `@mvdbeek `_ in `#18111 `_ * Minor fix to enable external hgweb process by `@mvdbeek `_ in `#18256 `_ ============= Other changes ============= * Replace busybox:ubuntu-14.04 image with busybox:1.36.1-glibc by `@mvdbeek `_ in `#18428 `_ ------------------- 24.0.2 (2024-05-07) ------------------- No recorded changes since last release ------------------- 24.0.1 (2024-05-02) ------------------- ========= Bug fixes ========= * Invenio plugin fixes by `@davelopez `_ in `#17997 `_ * clarify the object store relocate functionality by `@martenson `_ in `#18033 `_ * Updated the datatypes name for FASTK tool by `@SaimMomin12 `_ in `#18053 `_ ============ Enhancements ============ * Added 4dn_pairs and 4dn_pairsam datatypes by `@SaimMomin12 `_ in `#17875 `_ * Add middleware for logging start and end of request by `@mvdbeek `_ in `#18046 `_ ============= Other changes ============= * Rebuild config samples by `@davelopez `_ in `#17911 `_ * Backport colabfold tar file datatype by `@mvdbeek `_ in `#18029 `_ ------------------- 24.0.0 (2024-04-02) ------------------- ========= Bug fixes ========= * Follow-up on #17274 and #17262 by `@nsoranzo `_ in `#17302 `_ * Fix minor oidc_backends_config comment bug by `@ahmedhamidawan `_ in `#17385 `_ ============ Enhancements ============ * Add harmonize collections tool (or whatever other name) by `@lldelisle `_ in `#16662 `_ * Python 3.8 as minimum by `@mr-c `_ in `#16954 `_ * Support for OIDC API Auth and OIDC integration tests by `@nuwang `_ in `#16977 `_ * Add support for (fast5.tar).xz binary compressed files by `@tuncK `_ in `#17106 `_ * Add a3m datatype by `@astrovsky01 `_ in `#17217 `_ * Convert sample object store configuration to YAML and support configuring inline by `@natefoo `_ in `#17222 `_ * Allow job files to consume TUS uploads by `@jmchilton `_ in `#17242 `_ * Add OIDC backend configuration schema and validation by `@uwwint `_ in `#17274 `_ * Update to black 2024 stable style by `@nsoranzo `_ in `#17391 `_ * Allow using tool data bundles as inputs to reference data select parameters by `@mvdbeek `_ in `#17435 `_ * Use short link for TPV shared database by `@nuwang `_ in `#17467 `_ * Feature SBOL datatypes by `@guillaume-gricourt `_ in `#17482 `_ * Add documentation on how to use vault keys in file sources by `@bernt-matthias `_ in `#17498 `_ * add npy datatype by `@astrovsky01 `_ in `#17517 `_ * Enhance Avivator display app to support regular Tiffs by `@davelopez `_ in `#17554 `_ * Allow admin to sharpen language about selected object stores. by `@jmchilton `_ in `#17806 `_ ------------------- 23.2.1 (2024-02-21) ------------------- ========= Bug fixes ========= * pin fs.dropboxfs to >=1 by `@bernt-matthias `_ in `#16451 `_ * MINERVA display application: enable cors, add for tabular by `@hexylena `_ in `#16737 `_ * chore: fix typos by `@afuetterer `_ in `#16851 `_ * Add back 1.1.0 version of Filtering1 tool by `@mvdbeek `_ in `#16883 `_ * Set webdav file source to use temp files by default by `@davelopez `_ in `#17388 `_ ============ Enhancements ============ * Update cellxgene interactive tool to 1.1.1 by `@pcm32 `_ in `#15313 `_ * Tool Shed 2.0 by `@jmchilton `_ in `#15639 `_ * Limit number of celery task executions per second per user by `@claudiofr `_ in `#16232 `_ * Add carbon emissions admin configuration options by `@Renni771 `_ in `#16307 `_ * Add Invenio RDM repository integration by `@davelopez `_ in `#16381 `_ * Add new datatype: STL by `@TanguyGen `_ in `#16478 `_ * add new tabular file formats cns,cnr and cnn to datatypes_conf.xml.sample file as they are neaded for cnvkit galaxy tools by `@khaled196 `_ in `#16503 `_ * Tweak tool memory use and optimize shared memory when using preload by `@mvdbeek `_ in `#16536 `_ * Implement datatype upload warnings by `@jmchilton `_ in `#16564 `_ * Support new genome browser chain file format by `@claudiofr `_ in `#16576 `_ * Update Python dependencies by `@galaxybot `_ in `#16577 `_ * Implement instance URLs in Galaxy markdown. by `@jmchilton `_ in `#16675 `_ * Use fs.onedatarestfs for Onedata files source plugin implementation by `@lopiola `_ in `#16690 `_ * Update datatypes_conf.xml.sample with docx type by `@yvanlebras `_ in `#16713 `_ * Replace ELIXIR AAI button with Life Science login by `@sebastian-schaaf `_ in `#16762 `_ * Add EGI Check-in as OIDC authentication option by `@enolfc `_ in `#16782 `_ * Updated path-based interactive tools with entry point path injection, support for ITs with relative links, shortened URLs, doc and config updates including Podman job_conf by `@sveinugu `_ in `#16795 `_ * Galaxy help forum integration by `@ElectronicBlueberry `_ in `#16798 `_ * Remove record access handling for Invenio RDM plugin by `@davelopez `_ in `#16900 `_ * optimize object store cache operations by `@SergeyYakubov `_ in `#17025 `_ * Support configuring job metrics inline, update documentation by `@natefoo `_ in `#17178 `_ * Add binary datatypes for intermediate output of fastk tools by `@astrovsky01 `_ in `#17265 `_ * Add magres datatype by `@martenson `_ in `#17499 `_ ============= Other changes ============= * Merge 23.1 into dev by `@mvdbeek `_ in `#16534 `_ * Remove xml remnant in sample yml job conf by `@bernt-matthias `_ in `#16609 `_ ------------------- 23.1.4 (2024-01-04) ------------------- No recorded changes since last release ------------------- 23.1.3 (2023-12-01) ------------------- No recorded changes since last release ------------------- 23.1.2 (2023-11-29) ------------------- ========= Bug fixes ========= * Prevent Singular external auth users from disconnecting identity by `@ahmedhamidawan `_ in `#16961 `_ * Set correct tool_path for packaged galaxy by `@mvdbeek `_ in `#17102 `_ ============ Enhancements ============ * Add support for larch datatypes by `@patrick-austin `_ in `#17080 `_ ------------------- 23.1.1 (2023-10-23) ------------------- ========= Bug fixes ========= * Fix some drs handling issues by `@nuwang `_ in `#15777 `_ * Improve container resolver documentation by `@mvdbeek `_ in `#16280 `_ * Limit tool document cache to tool configs with explicit cache path by `@mvdbeek `_ in `#16537 `_ * Backport tool mem fixes by `@mvdbeek `_ in `#16601 `_ * Fix allowlist deserialization in file sources by `@mvdbeek `_ in `#16729 `_ ============ Enhancements ============ * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan `_ in `#15019 `_ * Add slack error reporting plugin by `@hexylena `_ in `#15025 `_ * Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 `_ in `#15110 `_ * Expose additional beaker caching backends by `@claudiofr `_ in `#15349 `_ * Unify url handling with filesources by `@nuwang `_ in `#15497 `_ * Handle "email_from" config option consistently, as per schema description by `@jdavcs `_ in `#15557 `_ * Drop workflow exports to myexperiment.org by `@dannon `_ in `#15576 `_ * Container resolvers: add docs, typing and tests by `@bernt-matthias `_ in `#15614 `_ * Add suggested Training material to Tool Form by `@ElectronicBlueberry `_ in `#15628 `_ * Deprecate tools/evolution by `@bernt-matthias `_ in `#15656 `_ * Add Galaxy Notification System by `@davelopez `_ in `#15663 `_ * More object store documentation. by `@jmchilton `_ in `#15707 `_ * Drop use_legacy_history from config by `@dannon `_ in `#15861 `_ * FITS data format by `@volodymyrss `_ in `#15905 `_ * Export tool citations configurable message by `@minh-biocommons `_ in `#15998 `_ * Rename object stores in config. by `@jmchilton `_ in `#16029 `_ * Add hdf4 datatype by `@TheoMathurin `_ in `#16105 `_ * Improved Cache Monitoring for Object Stores by `@jmchilton `_ in `#16110 `_ * Refactor caching object stores ahead of adding task-based store. by `@jmchilton `_ in `#16144 `_ * Add zipped mongodb and genenotebook datatypes by `@abretaud `_ in `#16173 `_ * Add Visium datatype for squidpy and spatialomics tools by `@astrovsky01 `_ in `#16255 `_ ============= Other changes ============= * Implement some initial object store selection end-to-end tests. by `@jmchilton `_ in `#15785 `_ ------------------- 23.0.6 (2023-10-23) ------------------- No recorded changes since last release ------------------- 23.0.5 (2023-07-29) ------------------- ========= Bug fixes ========= * Minor bug fix for default mail templates by `@neoformit `_ in `#16362 `_ ------------------- 23.0.4 (2023-06-30) ------------------- No recorded changes since last release ------------------- 23.0.3 (2023-06-26) ------------------- No recorded changes since last release ------------------- 23.0.2 (2023-06-13) ------------------- No recorded changes since last release ------------------- 23.0.1 (2023-06-08) ------------------- ========= Bug fixes ========= * Change default watchdog inotify_buffer log level to info by `@mvdbeek `_ in `#15967 `_ ============ Enhancements ============ * Add ``ca_certs`` option for sentry client by `@mvdbeek `_ in `#15943 `_ ------------------- 22.1.1 (2022-08-22) ------------------- * Initial release