name: Converter tests
on:
  push:
    paths-ignore:
      - 'client/**'
      - 'doc/**'
      - 'packages/**'
  pull_request:
    paths-ignore:
      - 'client/**'
      - 'doc/**'
      - 'packages/**'
  schedule:
    # Run at midnight UTC every Tuesday
    - cron: '0 0 * * 2'
env:
  GALAXY_TEST_RAISE_EXCEPTION_ON_HISTORYLESS_HDA: '1'
concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true
jobs:
  test:
    name: Test
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.10']
    steps:
      - if: github.event_name == 'schedule'
        run: |
          echo "GALAXY_CONFIG_OVERRIDE_METADATA_STRATEGY=extended" >> $GITHUB_ENV
          echo "GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY=true" >> $GITHUB_ENV
      - uses: actions/checkout@v6
        with:
          path: 'galaxy root'
          persist-credentials: false
      - name: Clone galaxyproject/galaxy-test-data
        uses: actions/checkout@v6
        with:
          repository: galaxyproject/galaxy-test-data
          path: galaxy-test-data
          persist-credentials: false
      - uses: actions/setup-python@v6
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install uv
        uses: astral-sh/setup-uv@v7
      - name: Move test data
        run: rsync -av --remove-source-files --exclude .git galaxy-test-data/ 'galaxy root/test-data/'
      - name: Install planemo
        run: uv tool install planemo
      - name: Determine converters to check
        run: |
          ls 'galaxy root'/lib/galaxy/datatypes/converters/*xml | grep -v -f 'galaxy root'/lib/galaxy/datatypes/converters/.tt_skip > tool_list.txt
          echo "Skipping checks for the following converters:"
          ls 'galaxy root'/lib/galaxy/datatypes/converters/*xml | grep -f 'galaxy root'/lib/galaxy/datatypes/converters/.tt_skip
          echo "Checking only the following converters:"
          cat tool_list.txt
      - name: Lint converters
        run: |
          mapfile -t TOOL_ARRAY < tool_list.txt
          planemo lint --skip CitationsMissing,HelpEmpty,HelpMissing --report_level warn "${TOOL_ARRAY[@]}"
      - name: Run tests
        run: |
          mapfile -t TOOL_ARRAY < tool_list.txt
          planemo test --biocontainers --galaxy_python_version ${{ matrix.python-version }} --galaxy_root 'galaxy root' "${TOOL_ARRAY[@]}"
      - uses: actions/upload-artifact@v7
        if: failure()
        with:
          name: Converter test results (${{ matrix.python-version }})
          path: tool_test_output.html